Tcga-prad dataset
WebJun 22, 2024 · For the TCGA-PRAD dataset, the AUC and p-value were 0.837 and 5 × 10-13, respectively. For five external datasets, the AUCs and p-values ranged from 0.632 to 0.794 and 6 × 10-2 to 5 × 10-5, respectively. The signature also performed well in predicting relapse-free survival (RFS). The signature-based transcriptomic risk scores (TRS) … WebJul 30, 2024 · Patients within each tumor type in the TCGA datasets were divided into two groups based on their median CHD5 expression levels to compare the extent of immune cell ... (PRAD), (D) Colon adenocarcinoma/Rectum adenocarcinoma Esophageal carcinoma (COADREAD), (E) Glioma, (F) Kidney Chromophobe (KICH), (G) Pan-kidney cohort …
Tcga-prad dataset
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WebMar 14, 2024 · Prostate cancer datasets and pre-processing. Transcriptome profiles and clinicopathological characteristics of seven datasets of localized prostate cancer were downloaded from TCGA and GEO databases, including GSE46602, GSE54460, GSE70768, GSE70769, GSE94767, DKFZ2024, and TCGA-PRAD [20,21,22,23,24].The Affymetrix … WebThe Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor …
WebOct 12, 2024 · Based on our biomarker panel, we used the whole TCGA PRAD datasets to build a generalized linear model by 5 biomarkers with the lowest AIC to separate normal tissues and PRAD samples, 0.878 * cg04633600 − 0.722 * cg05796128 − 0.853 * cg23523811 − 1.524 * cg23881697 − 0.964 * cg24755931 + 13.851. To validate the … WebNov 5, 2016 · As part of The Cancer Genome Atlas (TCGA), we present a comprehensive molecular analysis of 333 primary prostate carcinomas. Our results revealed a molecular taxonomy in which 74% of these tumors fell into one of seven subtypes defined by specific gene fusions (ERG,ETV1/4, FLI1) or mutations (SPOP,FOXA1,IDH1).
http://linkedomics.org/data_download/TCGA-PRAD/ WebThe Pan-Cancer Atlas (PanCanAtlas) initiative aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA …
WebOver the next dozen years, TCGA generated over 2.5 petabytes of genomic, epigenomic, transcriptomic, and proteomic data. The data, which has already led to improvements in …
WebJun 1, 2024 · Results: Three hundred twelve up-regulated genes and 85 down-regulated genes were identified from three gene expression profiles (GSE69223, GSE3325, GSE55945) and The Cancer Genome Atlas Prostate Adenocarcinoma (TCGA-PRAD) dataset. Seven hub genes (FGF2, FLNA, FLNC, VCL, CAV1, ACTC1, and MYLK) further … townhomes for sale in mahopac nyWebMay 8, 2024 · The datasets originate from different sources. Despite the fact that the tissue is stained in all cases with hematoxylin and eosin (H&E) and that all the datasets are from prostate tissue, the visual appearance of the images shows many differences in … townhomes for sale in maineWebMar 5, 2024 · Table 2 Modules for the PRAD dataset ranked by percentage of functionally enigmatic genes. ... the sheer volume of data available in projects such as TCGA means … townhomes for sale in macedonia ohioWebWe have chosen the TCGA-UVM cohort as a training dataset and GSE22138 as a testing dataset by mining publicly available databases. The abundance of 22 immune cell types was estimated using CIBERSORTx. townhomes for sale in macungie paWebFeb 16, 2024 · In TCGA-PRAD dataset, a total of 39 types of chemokines were expressed; noticeably, the expression level of each gene varied significantly among four immune subtypes ( p < 0.01, Figure 3 (a) ), and the expression of chemokine receptors was also differential among the four groups ( p < 0.01, Figure 3 (b) ). townhomes for sale in loveland coloradoWebOct 5, 2024 · The GSE38241, GSE3325, and GSE46602 microarray datasets (Supplementary Table 1) were downloaded from the NCBI GEO dataset containing the tumor and normal prostate samples. In addition, the statistics and clinical information were downloaded from the TCGA database for TCGA-PRAD (RNA-seq) counts, including 498 … townhomes for sale in malvern paWebApr 13, 2024 · The top 100 BUB1B-correlated genes with the most comparable expression patterns to BUB1B were extracted from the TCGA datasets using the ... READ, COADREAD, THCA, BLCA, PRAD, SKCM ... townhomes for sale in manassas va